Workspace files

Every file in a generated workspace, who owns it, and who changes it.

Path	Owner	Agent may edit?	Purpose
AGENTS.md	template	no	Short instructions: session loop, rules, variant notes
CLAUDE.md	template	no	@AGENTS.md (so Claude Code reads the same file)
TASK.md	project	ticks boxes, overwrites Handoff	Goal, acceptance criteria, steps, scope, Handoff
CHANGELOG.md	project	adds entries at top	Dated, human-readable history of the deliverable
.copier-answers.yml	Copier	no	Template version and answers; used by copier update
context/	generated	no	JIRA/Confluence snapshots (reference, not instructions)
standards/plotting.md, writing.md	template	no	The rules
standards/teamplot/	template	no	Plot helpers + matplotlibrc
standards/latex/	template	no	teamtufte.sty, layout.tex
standards/mermaid/	template	no	Diagram theme
diagrams/*.mmd	project	yes	Mermaid sources
figures/<name>.{pdf,png,svg}	generated	via scripts only	Rendered plots and diagrams
figures/<name>.settings.{json,tex}	generated	via teamplot.save	Settings for captions
figures/annotated/	humans	never	Hand-annotated overrides
scripts/fetch_context.py	template	runs it	Snapshot JIRA/Confluence
scripts/render_diagrams.py	template	runs it	Mermaid → figures
scripts/check_figures.py	template	runs it	Stale-annotation check
requirements.txt	template	no	Python dependencies
notebooks/ / docs/ / paper/	project	yes	The deliverable (one per variant)
paper/.latexmkrc	template	no	TeX search path, tolerant BibTeX

“Template-owned” files are refreshed by copier update; local edits to them get merged or flagged as conflicts, so propose changes to the template instead.